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BIOINFORMATICS TRAINING SCHOOL (EuGESMA)
23-24 Marzo 2010 - Barcelona - Spain


 

2nd session: Microarray data analysis: analysis of exon arrays and miRNA arrays; mapping of different RNAs to the genome landscape. Javier DE LAS RIVAS.

Web Application: GATEexplorer: Genomic and Transcriptomic Explorer

File 2.1: TUTORIAL Exon Arrays [PDF, 32 KB]

File 2.2: TUTORIAL Exon Arrays [DOC, 16 KB]

File 2.3: DATA Exon Arrays [ZIP, 139.1 MB]

File 2.4: TUTORIAL Exon Arrays [R, 4 KB]

File 2.5: PRESENTATION Expression Arrays and GATExplorer [PDF, 4.9 MB]


3rd session: Microarray data analysis: SNP arrays applied to calculate Copy Number alterations in cancer samples. Celia FONTANILLO and Javier DE LAS RIVAS.

Web Site 1: aroma.affymetrix

Web Site 2: aroma.affymetrix

File 3.1: TUTORIAL SNP Arrays, CopyNumber [PDF, 1.5 MB]

File 3.2: TUTORIAL SNP Arrays, CopyNumber [DOC, 460 KB]

File 3.3: DATA CELs and ANNOTATION [ZIP, 345.6 MB]

File 3.4: DATA Intermediate Reports [ZIP, 206.1 MB]

File 3.5: R RData [R, 2.9 MB]

File 3.6: Article CRMA [PDF, 336 KB]

File 3.7: Article CRMAv2 [PDF, 660 KB]

File 3.8: PRESENTATION SNP Arrays and aroma.affymetrix [PDF, 6.3 MB]

 

 

 
© Centro de Investigación del Cáncer (CIC-IBMCC, USAL/CSIC) Salamanca, España