HERRAMIENTAS - GRUPO DE INVESTIGACÓN BIOINFORMÁTICA

El Grupo de Investigación en Bioinformática y Genómica Funcional del Centro de Investigación del Cáncer ofrece una serie de herramientas de análisis bioinformático que se presentan a continuación brevemente. Las notas de explicación están en inglés al igual que las herramientas.

--- --- ---

APID - Agile Protein Interaction DataAnalyzer

Descripción: APID (Agile Protein Interaction DataAnalyzer) is an interactive bioinformatic web-tool that has been developed to allow exploration and analysis of main currently known information about protein-protein interactions (PPI) integrated and unified in a common and comparative platform.

URL: http://bioinfow.dep.usal.es/apid

mapCGHetExpression - Tool to map CGH and expression changes

Descripción: This bioinformatic tool allow dynamic mapping of the gene expression signals and the genomic copy number changes upon the genomic landscape.

URL: http://cicblade.dep.usal.es

MicroarrayDB - Microarrays Database

Descripción: MicroarrayDB is a new database designed and built to allocate the data from microarrays used in biomolecular studies, mainly genome-wide expression microarrays with special focus on GeneChips from Affymetrix, although is also designed to include other types of genomic microarrays like the ones of CGH and SNPs.

URL: http://bioinfo.dep.usal.es/MicroarrayDB

ProbeExplorer - Genome and oligo-probe browser

Descripción: ProbeExplorer is a suite of web-based bioinformatic tools mainly intended to investigate at genomic level the association between oligonucleotide probes and transcripts, but flexible enough to serve as a general genome and transcriptome browser, that includes expression data for many human and mouse genes.

URL: http://probeexplorer.cicancer.org

webbioc - BioConductor Web Tool

Descripción: webbioc is a web interface for some of the Bioconductor microarray analysis packages related to Affymetrix microarrays. The existing modules provide a workflow that takes users from CEL files to differential expression with multiple hypothesis testing control, and finally to metadata annotation of the gene lists.

URL: http://cicblade.dep.usal.es

URL: http://www.bioconductor.org