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TOOLS - BIOINFORMATICS RESEARCH GROUP

The Bioinformatics and Functional Genomics Research Group at the Cancer Research Center has developed a series of bioinformatic analysis tools that are briefly presented below.

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APID - Agile Protein Interaction DataAnalyzer

Description: APID (Agile Protein Interaction DataAnalyzer) is an interactive bioinformatic web-tool that has been developed to allow exploration and analysis of main currently known information about protein-protein interactions (PPI) integrated and unified in a common and comparative platform.

URL: http://bioinfow.dep.usal.es/apid

GATE - Genomic and Transcriptomic Explorer

Description: GATE is a bioinformatic web platform designed to allow integrated exploration of genes, transcripts and expression in the genomic context, which includes complete up-to-date mapping and interactive location of all oligonucleotide probes from expression microarrays for human, mouse and rat.

URL: http://bioinfow.dep.usal.es/xgate

mapCGHetExpression - Tool to map CGH and expression changes

Description: This bioinformatic tool allow dynamic mapping of the gene expression signals and the genomic copy number changes upon the genomic landscape.

URL: http://cicblade.dep.usal.es

MicroarrayDB - Microarrays Database

Description: MicroarrayDBMicroarrayDB is an internal repository designed and built to allocate the data from microarrays used in biomolecular studies, mainly genome-wide expression microarrays with special focus on GeneChips from Affymetrix, although is also designed to include other types of genomic microarrays like the ones of CGH and SNPs.

webbioc - BioConductor Web Tool

Description: webbioc is a web interface for some of the Bioconductor microarray analysis packages related to Affymetrix microarrays. The existing modules provide a workflow that takes users from CEL files to differential expression with multiple hypothesis testing control, and finally to metadata annotation of the gene lists.

URL: http://cicblade.dep.usal.es

URL: http://www.bioconductor.org

HELP AND INFORMATION FOR FUNCTIONAL ANALYSIS

FUNCTIONAL ANALYSIS

 
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